====================================== HOWTO setup an NREC development system ======================================
Contents ======== 1. Hardware requirements 2. Linux kernel 3. RTAI Modules 4. Comedi 5. Qwt 6. Development tools and libraries 7. NREC 8. Known issues
1. Hardware requirements ======================= - Modern x86 PC - Dual head graphics adapter - For Data Acquisition and Digital I/O development: A Comedi (see www.comedi.org) compatible DAQ card, e.g. a Measurement Computing PCI-DAS6025. - For the Trigger/Clipping the following connections must be established:
- DOut Channel 0 (trigger subdevice) - AIn Channel 2 (analog in subdevice) If subdevice for spike recording is available: DOut Channel 0 (trigger subdevice) - DIn Channel 0 (digital in/spikes subdevice)
2. Linux Kernel =============== - Recent stable 2.6 kernel. Either from kernel.org or from your distribution, e.g. Debian packaged kernel. - Make sure the following configuration options are selected. (Current Debian Sarge kernel-images have all these options set, so there is probably no need to build a custom kernel.):
- - CONFIG_PREEMPT: Preemptible kernel gives better latencies for realtime tasks.
2.1 Linux Kernel with RTAI realtime extensions ============================================== - Install latest stable kernel sources
- Get latest stable linux kernel source from
http://kernel.org/ e.g.: $ wget http://kernel.org/pub/linux/kernel/v2.6/linux-2.6.22.6.tar.bz2
- Install RTAI extensions
- # apt-get install rtai
- This should install rtai-source, rtai-doc and kernel-patch-adeos
- Unpack kernel-sources and rtai-sources
$ cd $HOME/tmp && tar xjf /usr/src/kernel-source-2.6.8.tar.bz2 && tar xjf rtai-source.tar.bz2
- Change into the build dir
- $ cd kernel-source-2.6.x
- Copy config file of your running kernel into the build dir (for a reasonable default config)
- $ cp /boot/config-2.6.x .config
- Get package fpr kernel-compilation:
- # apt-get install kernel-package
- Apply rtai patch suitable for your kernel version:
# patch -p1 --dry-run <
- ./rtai/vulcano/base/arch/i386/patches/hal-linux-2.6.19-i386-1.7-01.patch
# patch -p1 < ../rtai/vulcano/base/arch/i386/patches/hal-linux-2.6.19-i386-1.7-01.patch
- Configure and build kernel
- $ fakeroot make-kpkg --initrd --append-to-version rtai --config menuconfig kernel-image When the kernel menuconfig menu pops up, make sure
(a) The right processor type for your system is selected (Processor type and features -> Processor family). (b) "Loadable module support -> Module versioning support" is disabled. (c) Processor Type and Features > Symmetric multi-processing support is enabled (d) See above (2. Linux Kernel) for additional required config options. Then "Exit", Answer question "Save kernel config?" with "Yes" and wait for the kernel to compile (Take a break).
- Leave kernel source dir
- $ cd ..
- Install the built kernel
- $ su -c "dpkg -i linux-image-2.6.19.7rtai-10.00.Custom_i386.deb
- check grub boot manager entry:
- $ less /boot/grub/menu.lst
- If you get lots of IRQ-related messages after rebooting, insert the parameters noirqdebug and pci=noacpi to the kernel-command of your boot-manager (lilo or grub).
3. RTAI Modules ===============
- Get rtai from https://www.rtai.org/RTAI/ - or check out stable branch (vulcano) via cvs to /usr/local/src/rtai/vulcano:
$ cvs -d:pserver:anonymous@cvs.gna.org:/cvs/rtai co vulcano
- Install like written in /usr/local/src/rtai/vulcano/README.INSTALL:
- # cd /usr/local/src/rtai/
# mkdir build && cd build/ # make -f ../vulcano/makefile menuconfig
- In the menu "General" set the rtai-path (/usr/lib/realtime)
- and the path to the kernel sources (/usr/local/src/linux-2.6.19.7).
- Make it:
- # make -f ../vulcano/makefile # make install
- If you would like to test rtai, do:
- # export PATH=/usr/lib/realtime/bin:$PATH # cd /usr/lib/realtime/testsuite/kern/latency # ./run
- It is useful to link the rtai modules to /lib/modules/$(uname -a)/
- because they can then be loaded automatically if e.g. a comedi module needs them:
- # ln -s /usr/lib/realtime/modules /lib/modules/2.6.19.7rtai/rtai # depmod -a
4. Comedi ========= - The official comedi-source package in the Debian repository which
- provides the source for Comedi kernel modules (DAQ drivers) is outdated and lacks support for newer kernels or hardware.
More recent versions can be obtained from [http://www.comedi.org/download.html] but not in Debian package (.deb) format; so they are not as easy installable and removable as the Debian ones. This is why this document explains how to create a Debian package from Comedi CVS (with the tarballs released on [http://www.comedi.org/download/] this is even simpler as there is no need to run autgen.sh).
- You will need some Debian administration and development tools.
- # apt-get install build-essential dpkg-dev devscripts debhelper fakeroot \
- linda apt-src module-assistant
- Get original debian comedi package source:
- $ cd /usr/local/src
$ mkdir comedi-debian && cd comedi-debian $ su -c "apt-src update" $ apt-src install comedi-source $ cd ..
- Get current comedi release:
- Unpack:
- # tar xzf comedi-0.7.74.tar.gz
- Merge with debian source:
- # cp -r comedi-debian/comedi-0.7.70/debian comedi-0.7.74/ # cd comedi-0.7.74
- Now, we have to generate a list of files which are to be included in the package:
$ find . -path ./debian -prune -o -type f -print > debian/driver.files
- and add a changelog entry at the top of debian/changelog:
- $ vim debian/changelog The changelog has to obey a strict format, so copy an existing entry and carefully apply your changes without changing the amount of whitespace in the header and footer lines. An example:
- comedi (0.7.74-1) unstable; urgency=low
- Debianizing the comedi-0.7.74 release tarball.
-- Jan Gukelberger <g.u.g.i@gmx.de> Wed, 19 Sep 2007 19:16:22 +0100
- The term in parentheses defines the version of the created package. You should choose the format [upstream.version]-[your.version] where [upstream.version] is the last version number released by the
Comedi project (can be checked at http://www.comedi.org/download/).
- NOTE1: Currently (Feb 2007) Comedi PCMCIA drivers are broken with kernels >= 2.6.17.
- Therefore you have to edit debian/rules to not build those drivers or the last installation step (module-assistant) will fail. Add the option '--disable-pcmcia' to the './configure' line. See below [A.2] for a patch.
- NOTE2: If you are using debian/rules from an old debian package (i.e. 0.7.70 or earlier)
- you also have to add the right rtai path to the ./configure line:
- /configure [...] --with-rtaidir=/usr/lib/realtime --disable-pcmcia
- Now we can finally build the Debian package:
- $ debuild --linda -us -uc --linda-opts -i [Say 'y' if you are asked whether to continue despite a missing original tar file.]
- If everything went well you now have a debian package in the parent directory.
- $ cd ..
- NOTE3: This .deb package is system independent. I.e. having created it once
- you can copy the package to any Debian system and need only execute the following two "Modules install" commands to install Comedi drivers on this system.
- Install your created Debian package:
- $ su -c "dpkg -i comedi-source_[version]_all.deb" e.g. # dpkg -i comedi-source_0.7.74-1_all.deb
- Build and install the comedi-modules for your running kernel using module-assistant (m-a):
- $ su -c "m-a a-i -t comedi"
- Make comedilib package:
- Download comedilib-x.x.x.tar.gz from http://www.comedi.org/download
- Unpack:
- # cd /usr/local/src # tar xjf comedilib-0.8.0.tar.bz2 # cd comedilib-0.8.0
- Make package:
- # debuild --linda -us -uc --linda-opts -i # cd ..
- Install package:
- # dpkg -i libcomedi-0.8.0_0.8.0-1_i386.deb libcomedi-dev_0.8.0-1_i386.deb #
- Load modules and associate comedi-driver of your card to comedi-device:
(find appropriate driver at http://www.comedi.org/hardware.html) # RTAI modules modprobe rtai_hal modprobe rtai_fifos # Comedi modules modprobe ni_pcimio #modprobe cb_pcidas64 modprobe comedi_rt_timer modprobe kcomedilib
- Configure comedi with the comedi-driver of your card
(find appropriate driver at http://www.comedi.org/hardware.html): Measurement Computing:
- # comedi_config /dev/comedi0 cb_pcidas64
- # comedi_config /dev/comedi0 ni_pcimio
- Test comedi installation:
- # comedi_test
- Modules can be specified in /etc/modules,
- comedi_config can be called in a startup-script for automation
- (put A.3 into /etc/init.d/comedi-device):
- # ln -s /etc/init.d/comedi-device /etc/rc4.d/S30comedi-device # ln -s /etc/init.d/comedi-device /etc/rc5.d/S30comedi-device
5. Qwt ========== - Make sure you have qt3 installed:
- # apt-get install qt3-dev-tools qt3-designer qt3-apps-dev qt3-assistant qt3-doc
- Download the latest Qwt 5.0 from
http://sourceforge.net/projects/qwt -> "Download qwt" -> "qwt" (currently: qwt-5.0.2.tar.bz2)
- Unpack the archive:
- $ tar xjf qwt-5.0.2.tar.bz2
- Build the library:
- $ cd qwt-5.0.2 $ qmake qwt.pro $ make
- To use the library you have to
- o EITHER install Qwt by
- (a) copying the files in src/ to /usr/local/include/. (b) copying those in lib/ to /usr/local/lib/. (c) running ldconfig as root.
- (a) adding the path to include/ to the INCLUDEPATH line in the nrec *.pro file. (b) adding the path to lib/ to the LIBS line in the nrec *.pro file (prefixed with '-L'). (c) adding the path to lib/ to the LD_LIBRARY_PATH environment variable.
6. Development tools and libraries ================================== - Install subversion client
- # apt-get install subversion
- Install kdevelop (optional)
- # apt-get install kdevelop
- Install the HDF5 library (required) and tools (optional)
- # apt-get install 'libhdf5-serial*' hdf5-tools
- Install the movie libraries
- # apt-get install libavformat-dev libavcodec-dev libpostproc-dev
- Install the gnu scientific library
- # apt-get install gsl-bin libgsl0 libgsl0-dev
7. NREC =======
- Checkout module "nrec" from the subversion server
$ svn co https://jan@134.2.114.11/nrec
- Generate Makefile from qmake project file
$ cd branches/src-xstimulus && qmake -o Makefile CTestExperiment.pro
- Import NREC project into KDevelop (optional)
- 1) Run kdevelop
2) "Project" -> "Import Existing Project"
- Directory: Browse to nrec/branches/src-xstimulus you have just checked out.
- Fetch from: Ignore this.
- Project Name: "nrec"
- Project Type: "QT C++ Application (QMake based)"
- Author: Your Name
- Email: Your Email address
- Compile NREC. Either in KDevelop "Build" -> "Build Project" or on the command line type
- $ make
8. Known issues ===============
8.1 Frame length is 100ms too large: Symptoms: When NREC is started from X running on a second graphics adapter the first time, syslog says "Disbling IRQ X" and from now until reboot all frames are 100ms too long. Cause: For some reason, a flood of unhandled interrupts from the Matrox graphics card occurs and this IRQ is disabled by kernel interrupt debugging routines. Solution: Append the bootparam 'noirqdebug' to the kernel command line. (lilo.conf: Insert an append = "irqdebug" in the section of your kernel image; run lilo. See 'man 7 bootparam' and 'man 5 lilo.conf')
8.2 RealTime graphics thread runs away: Symptoms: Matrox graphics and MC DAQ card share the same IRQ (see 'lspci -v'). When a trial is started, the RT graphics thread takes all CPU time and {renders the system unusable | is killed by the watchdog}. Cause: matroxfb and Comedi cb_pcidas64 drivers interfere the IRQ management of each other. (Bad implementation in Comedi driver?) matroxfb can't enable the VSYNC interrupt so the ioctl( WAITFORVSYNC ) fails. Hence, DirectFB does a busy wait for the IRQ so the thread never sleeps. Solution: Put the DAQ card into another PCI slot that doesn't share interrupts with the AGP slot. Consult the motherboard manual or try it out. A good guess is a slot physically far away from the AGP slot.
8.3 dfb hangs at startup/initialization (dfbinfo hangs already) dfb init has problems, if the module has been loaded before X. Solution: Load matroxfb after X has been started. Reload dfb modules: # rmmod matroxfb_base matroxfb_DAC1064 matroxfb_accel cfbcopyarea cfbimgblt cfbfillrect matroxfb_Ti3026 matroxfb_g450 g450_pll matroxfb_misc mga # modprobe matroxfb_base # modprobe mga
==============
APPENDIX |
==============
A.1 RTAI device nodes creation script =====================================
8<
#!/bin/bash mkdir /dev/rtf for n in seq 0 9 do
- f=/dev/rtf/$n mknod -m 666 $f c 150 $n
done for n in seq 0 9 do
- f=/dev/rtf$n mknod -m 666 $f c 150 $n
done
8<
A.2 Patch to disable PCMCIA drivers: =====================================
--- comedi-debian/comedi-0.7.70/debian/rules 2007-02-25 18:12:38.000000000 +0100 +++ comedi-build/debian/rules 2007-02-25 18:56:10.000000000 +0100 @@ -34,7 +34,7 @@
- config.status: configure
- dh_testdir # Add here commands to configure the package.
- CFLAGS="$(CFLAGS)" ./configure --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --with-rtaidir=/usr/lib/realtime + CFLAGS="$(CFLAGS)" ./configure --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --with-rtaidir=/usr/lib/realtime --disable-pcmcia
- build-arch: build-arch-stamp
A.3 Startscript for automatically configuring comedi device: =============================================================
#! /bin/sh # # comedi-device Associate Comedi driver with device file # # Friedemann Bunjes <friedemann.bunjes@uni-tuebingen.de> #
case "$1" in
- start)
- echo -n "Associating Comedi driver with device file."
# comedi_config /dev/comedi0 ni_pcimio
- comedi_config /dev/comedi0 cb_pcidas64
- ;;
- stop)
- ;;
- ;;
- )
- ;;
esac
exit 0